Showing : Meta Analysis • reset
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metaDE R and RRA R
microarray meta analysis
5.1 years ago lily ▴ 20
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Meta_analysis of microarray data
microarray microarray data Meta Analysis platform
updated 6.1 years ago by 68k • written 6.1 years ago by • 0
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Meta_analysis of different platforms of microarray data
microarray meta analysis cancer Software R
updated 6.2 years ago by 68k • written 6.2 years ago by • 0
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how to convert DEGs indices to gene symbols or gene names which i get during meta analysis through MAMA package using pvalcombination function and me…
MAMA pvalcombination meta analysis metaMA DEGs' indices
6.9 years ago niteshkumar20sept • 0
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meta de r package
meta analysis
7.4 years ago lily ▴ 20
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Meta Analysis on CAMERA results
limma camera cohen d meta analysis
8.1 years ago Andy91 ▴ 60
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meta analysis of clc output(differential expression data )
rnaseq metaseq clc output pvalue meta analysis
updated 8.2 years ago by ▴ 10 • written 8.2 years ago by • 0
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combine different GSE on different GPL
annotation genesymbols meta analysis
9.0 years ago wahaha123 • 0
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Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0
Perhaps edgeR's upperquartile normalization handles this better, the MA looks a lot more centered at 0 ![enter image description here][1]…
Answer: DESeq2 - am I extracting results incorrectly? by James W. MacDonald 68k
If I assume that Followup gets converted to T3 and Treatment to LowSug somewhere along the line (and therefore GroupTreatment.Followup is G…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0
I noticed the dual populations as well, when using csaw this is controlled for. Regarding the DE profile, given this disease condition we e…
Answer: Origin of the labels for the SingleCellMultiModal dataset by ATpoint ★ 4.8k
If you check the underlying code a bit you find that there is a file with data sources: ```r modes_file <- system.file("extdata", "metadat…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by ATpoint ★ 4.8k
That plot looks extremely worrying. You have very unbalanced DE profiles and clearly two populations of peaks on the right. I would make su…
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Answer: Improving performance of edgeR and limma while adjusting for multiple confounder
Comment: DESeq - help with pair wise comparisons
Answer: Is random access by row index possible for an indexed VCF file?
Answer: Is random access by row index possible for an indexed VCF file?
Answer: SingleR with multiple single cell references
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